Fine-tuning plant responses to stress

To this end, Professor YU Hao and his team from NUS Biological Sciences, together with their collaborator, Dr Lisha SHEN’s team from Temasek Life Sciences Laboratory, delved into the genetic pathways that regulate ABA signalling in the model plant Arabidopsis. In their work, the team identified a novel ABA regulation mechanism involving a specific RNA modification known as N⁶‑methyladenosine (m⁶A) and its reader protein ECT8, which controls the fate of PYL7, a gene that encodes an ABA receptor, and thereby regulates ABA sensing within plant cells. This work was published in Nature Plants.

In this study, it was reported that ABA exposure triggers an increase in ECT8 expression, leading to the formation of stress granules in the plant cells. At present, not much is known about stress granules except that they store RNA molecules under stress conditions. Temporary storage of the RNA molecules plays a role in mediating the levels of resulting proteins in response to various stresses.

In Prof Yu’s experiments, it was shown that following ABA treatment, ECT8 facilitated the formation of droplet-like structures in the cell’s cytoplasm. These structures, often referred to as liquid-liquid phase-separated (LLPS) condensates, are the building blocks of stress granules.

Further investigations revealed that ECT8 selectively recruits certain m⁶A-modified RNA transcripts, including PYL7 into stress granules. This process partially depletes PYL7 mRNA in the cytoplasm, thereby reducing PYL7 protein levels and regulating ABA signalling. The process prevents hypersensitive reactions to the environmental stresses.

The team also showed that plants lacking functional ECT8 were unable to sequester PLY7 transcripts in stress granules even under the same ABA conditions. This saw more PYL7 transcripts translated into protein, leading to an overaccumulation of PYL7 and hypersensitive plant behaviours to stresses such as drought resistance.

To understand how ECT8 accomplishes this, they used advanced sequencing techniques to analyse the m⁶A modification patterns of mRNA molecules within stress granules. m⁶A is a chemical modification that occurs on RNA molecules in eukaryotic cells, and plays a crucial role in regulating various cellular processes, including cell differentiation, embryonic development, and stress responses. They found that ECT8 primarily recruits m⁶A-modified mRNAs that are involved in stress responses, metabolism, and protein synthesis.

Overall, this study sheds light on a novel regulatory paradigm in which m⁶A RNA modification plays a crucial role in enabling feedback regulation of ABA perception and signalling to prevent plant cells from overreacting to specific environmental stresses. It also demonstrated, for the first time, the underlying link between RNA modification, stress granule formation, and systemic ABA signalling in plants.

By studying the stress response of Arabidopsis, which is closely related to significant crop plants like choy sum, cabbage and broccoli, Prof Yu hopes the findings will contribute to the development of stress-tolerant crops with traits such as drought-resistance, in the future.